Abstract: Nernst and electrical resistivity measurements in superconducting YBa2Cu3O7-delta and Bi2Sr2CaCu2O8+delta with and without columnar defects show a distinctive thermodynamics of the respective liquid vortex matter. At a field-dependent high temperature region in the H-T phase diagram, the Nernst signal is independent of structural defects in both materials. At lower temperatures, in YBa2Cu3O7-delta, defects contribute only to the vortex mobility, and the transport entropy is that of a system of vortex lines. The transition to lower temperatures in Bi2Sr2CaCu2O8+delta has a different origin; the maximum in the Nernst signal when decreasing temperature is not associated with transport properties but with the entropy behavior of pancake vortices in the presence of structural defects.